Publications

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Journal Article
S. Shubham, Hoinka, J., Banerjee, S., Swanson, E., Dillard, J. A., Lennemann, N. J., Przytycka, T. M., Maury, W., and Nilsen-Hamilton, M., A 2'FY-RNA Motif Defines an Aptamer for Ebolavirus Secreted Protein, Sci Rep., vol. 8, no. 8, p. 12373, 2018.
S. L. Auwardt, Seo, Y. J., Ilgu, M., Ray, J., Feldges, R. R., Shubham, S., Bendickson, L., Levine, H. A., and Nilsen-Hamilton, M., Aptamer-enabled uptake of small molecule ligands, Sci Rep. , vol. 8, no. 1, p. 15712, 2018.
M. Ilgu and Nilsen-Hamilton, M., Aptamers in Analytics, The Analyst, vol. 141, pp. 1551-1568, 2016.
K. Santra, Geraskin, I. M., Nilsen-Hamilton, M., Kraus, G. A., and Petrich, J. \W., Characterization of the Photophysical Behavior of DFHBI Derivatives: Fluorogenic Molecules that Illuminate the Spinach RNA Aptamer, The Journal of Physical Chemistry B , vol. 123, no. 11, pp. 2536-2545, 2019.
M. Ilgu, Yan, S., Khounlo, R., Lamm, M. H., and Nilsen-Hamilton, M., Common secondary and tertiary structural features of aptamer-ligand interaction shared by RNA aptamers with different primary sequences, Molecules, vol. 24, no. 24, p. 4535, 2019.
V. Singh, Yeoh, B. S., Nilsen-Hamilton, M., Berger, T., Mak, T. W., and Vijay-Kumar, M., Data on IL-10R neutralization-induced chronic colitis in Lipocalin 2 deficient mice on BALB/c background, Data in Brief, vol. 11, pp. 588-592, 2017.
X. Liu, Zhang, H., Nayak, S., Parada, G., Anderegg, J., Feng, S., Nilsen-Hamilton, M., Akinc, M., and Mallapragada, S. K., Effect of Surface Hydrophobicity on the Function of the Immobilized Biomineralization Protein Mms6, Industrial & Engineering Chemistry Research , vol. 54, pp. 10284-10292, 2015.
J. Ray, Ilgu, M., Shin, I. C., Bendickson, L., Gupta, V., Kraus, G. A., and Nilsen-Hamilton, M., IMAGEtags; Quantifying mRNA Transcription in Real Time with Multiaptamer Reporters, Methods in Enzymology , vol. 572, pp. 193-213, 2016.
A. T. Londono-Calderon, Hossen, M. M., Palo, P. E., Bendickson, L., Nilsen-Hamilton, M., Hillier, A. C., and Prozorov, T., Imaging of Unstained DNA Origami Triangles with Electron Microscopy, Small Methods , vol. 3, no. 12, 2019.
A. Gosai, Yeah, B. S. Hau, Nilsen-Hamilton, M., and Shrotriya, P., Label free thrombin detection in presence of high concentration of albumin using an aptamer-functionalized nanoporous membrane, Biosens Bioelectron., vol. 126, pp. 88-95, 2019.
M. Ilgu, Ray, J., Bendickson, L., Wang, T., Geraskin, I. M., Kraus, G. A., and Nilsen-Hamilton, M., Light-up and FRET Aptamer Reporters; Evaluating Their Applications for Imaging Transcription in Eukaryotic Cells, Methods, vol. 98, pp. 26-33, 2015.
S. Nayak, Zhang, H., Liu, X., Feng, S., Palo, P., Nilsen-Hamilton, M., Akinc, M., and Mallapragada, S., Protein Patterns Template Arrays of Magnetite Nanoparticles, RSC Advances, vol. 6, pp. 57048-57056, 2016.
S. Yan, Peck, J., Ilgu, M., Nilsen-Hamilton, M., and Lamm, M. H., The Sampling Performance of Multiple Independent Molecular Dynamics Simulations of an RNA Aptamer, ACS Omega, vol. 5, no. 32, pp. 20187–20201, 2020.