Publications

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A
V. R. Sunil, Patel, K. J., Nilsen-Hamilton, M., Heck, D. E., Laskin, J. D., and Laskin, D. L., Acute endotoxemia is associated with upregulation of lipocalin 24p3/Lcn2 in lung and liver, Experimental and Molecular Pathology, vol. 83, pp. 177-87, 2007.
M. Ilgu, Fulton, D. B., Yennamalli, R. M., Lamm, M. H., Sen, T. Z., and Nilsen-Hamilton, M., An adaptable pentaloop defines a robust neomycin-B RNA aptamer with conditional ligand-bound structures, RNA, vol. 20, pp. 815-24, 2014.
X. Cong and Nilsen-Hamilton, M., Allosteric aptamers: targeted reversibly attenuated probes, Biochemistry, vol. 44, pp. 7945-54, 2005.
D. H. Burke, Ozerova, N. D., and Nilsen-Hamilton, M., Allosteric hammerhead ribozyme TRAPs, Biochemistry, vol. 41, pp. 6588-94, 2002.
H. A. Levine and Nilsen-Hamilton, M., Angiogenesis - a biochemical/mathematical perspective, in Tutorials in Mathematical Biosciences III; Cell cycle, proliferation and cancer, Mathematical Biosciences subseries 1872, Berlin: Springer-Verlag, 2006, pp. 23-76.
L. Bendickson and Nilsen-Hamilton, M., Applications, in Making and Using Antibodies; A Practical Handbook, Boca Raton: CRC Press, 2006, pp. 247-72.
K. Kang, Sachan, A., Nilsen-Hamilton, M., and Shrotriya, P., Aptamer functionalized microcantilever sensors for cocaine detection, Langmuir : the ACS journal of surfaces and colloids, vol. 27, pp. 14696-702, 2011.
A. SL, YJ., S., M, I., J, R., RR, F., S, S., L, B., HA, L., and M, N. - H., Aptamer-enabled uptake of small molecule ligands, Sci Rep. , vol. 8, no. 1.
S. L. Auwardt, Seo, Y. J., Ilgu, M., Ray, J., Feldges, R. R., Shubham, S., Bendickson, L., Levine, H. A., and Nilsen-Hamilton, M., Aptamer-enabled uptake of small molecule ligands, Sci Rep. , vol. 8, no. 1, p. 15712, 2018.
M. Ilgu, Fazlioglu, R., Ozturk, M., Ozsurekci, Y., and M, N. - H., Aptamers for diagnostics with applications for infectious diseases , in Recent Advances in Analytical Chemistry, 2019.
S. Banerjee and Nilsen-Hamilton, M., Aptamers for Infectious Disease Diagnosis, in IntechOpen, 2019.
M. Ilgu and Nilsen-Hamilton, M., Aptamers in Analytics, The Analyst, vol. 141, pp. 1551-1568, 2016.
J. Banerjee and Nilsen-Hamilton, M., Aptamers: multifunctional molecules for biomedical research, Journal of molecular medicine, vol. 91, pp. 1333-42, 2013.
J. Oh, McCloskey, M. A., Blong, C. C., Bendickson, L., Nilsen-Hamilton, M., and Sakaguchi, D. S., An astrocyte-derived interleukin-6 promotes specific neuronal differentiation of neural progenitor cells from adult hippocampus, Journal of Neuroscience Research, vol. 88, pp. 2798-809, 2010.
C
M. [ Nilsen-]Hamilton and Edelstein, S. J., Cat hemoglobin: pH dependence of cooperativity of ligand binding, Journal of Biologocal Chemistry, vol. 249, pp. 1323-1329, 1974.
M. [ Nilsen-]Hamilton and Edelstein., S. J., Cat hemoglobin: pH dependent cooperativity of oxygen binding, Science, vol. 8, pp. 1104-1106, 1972.
C. L. Parfett, Hamilton, R. T., Howell, B. W., Edwards, D. R., Nilsen-Hamilton, M., and Denhardt, D. T., Characterization of a cDNA clone encoding murine mitogen-regulated protein: regulation of mRNA levels in mortal and immortal cell lines, Molecular and cellular biology, vol. 5, pp. 3289-92, 1985.
J. T. Nelson, Rosenzweig, N., and Nilsen-Hamilton, M., Characterization of the mitogen-regulated protein (proliferin) receptor, Endocrinology, vol. 136, pp. 283-8, 1995.
K. Santra, Geraskin, I. M., Nilsen-Hamilton, M., Kraus, G. A., and Petrich, J. \W., Characterization of the Photophysical Behavior of DFHBI Derivatives: Fluorogenic Molecules that Illuminate the Spinach RNA Aptamer, The Journal of Physical Chemistry B , vol. 123, no. 11, pp. 2536-2545, 2019.
T. H. Chuang, Hamilton, R. T., and Nilsen-Hamilton, M., Cloning of the mink plasminogen activator inhibitor type-1 messenger RNA: an mRNA with a short half life, Gene, vol. 162, pp. 303-8, 1995.
D. T. Denhardt, Hamilton, R. T., Parfett, C. L., Edwards, D. R., St Pierre, R., Waterhouse, P., and Nilsen-Hamilton, M., Close relationship of the major excreted protein of transformed murine fibroblasts to thiol-dependent cathepsins, Cancer research, vol. 46, pp. 4590-3, 1986.
T. Prozorov, Palo, P., Wang, L., Nilsen-Hamilton, M., Jones, D., Orr, D., Mallapragada, S. K., Narasimhan, B., Canfield, P. C., and Prozorov, R., Cobalt ferrite nanocrystals: out-performing magnetotactic bacteria, ACSNano, vol. 1, pp. 228-33, 2007.
M. Ilgu, Yan, S., Khounlo, R., Lamm, M. H., and Nilsen-Hamilton, M., Common secondary and tertiary structural features of aptamer-ligand interaction shared by RNA aptamers with different primary sequences, Molecules, vol. 24, no. 24, p. 4535, 2019.
T. Wang, Hoy, J. A., Lamm, M. H., and Nilsen-Hamilton, M., Computational and experimental analyses converge to reveal a coherent yet malleable aptamer structure that controls chemical reactivity, Journal of the American Chemical Society, vol. 131, pp. 14747-55, 2009.
Y. J. Seo, Nilsen-Hamilton, M., and Levine, H. A., A computational study of alternate SELEX, Bulletin of mathematical biology, vol. 76, pp. 1455-521, 2014.
R. T. Hamilton and Nilsen-Hamilton, M., Conversion of monensin from an ionophore to an inhibitor of Na+ uptake by SV3t3 membrane vesicles as a function of Na+ concentration, Biochemical and biophysical research communications, vol. 95, pp. 140-7, 1980.
M. M. Hossen, Bendickson, L., Palo, P. E., Yao, Z., Nilsen-Hamilton, M., and Hillier, A. C., Creating metamaterial building blocks with directed photochemical metallization of silver onto DNA origami templates, NanotechnologyNanotechnology, vol. 29, p. 355603, 2018.
D
V. Singh, Yeoh, B. S., Nilsen-Hamilton, M., Berger, T., Mak, T. W., and Vijay-Kumar, M., Data on IL-10R neutralization-induced chronic colitis in Lipocalin 2 deficient mice on BALB/c background, Data in Brief, vol. 11, pp. 588-592, 2017.
D. Mitra, Bouthcko, R., Ray, J., and Nilsen-Hamilton, M., Detecting cells in time varying intensity images in confocal microscopy for gene expression studies in living cells, SPIE-2015 proceedings, 2015.
M. Nilsen-Hamilton and Hamilton, R. T., Detection of proteins induced by growth regulators, Methods in enzymology, vol. 147, pp. 427-44, 1987.
M. Nilsen-Hamilton, Matrisian, L. M., and Hamilton, R. T., Developing in a family way. Transforming Growth Factor Type beta and Related Proteins in Development: the Sixth Molecular, Cellular and Developmental Biology/Iowa State University Symposium, Ames, IA, USA September 20-23, 1991, The New biologist, vol. 4, pp. 127-31, 1992.
R. T. Hamilton, Bruns, K. A., Delgado, M. A., Shim, J. K., Fang, Y., Denhardt, D. T., and Nilsen-Hamilton, M., Developmental expression of cathepsin L and c-rasHa in the mouse placenta, Molecular reproduction and development, vol. 30, pp. 285-92, 1991.
K. Kang, Nilsen-Hamilton, M., and Shrotriya, P., Differential surface stress sensor for detection of chemical and biological species, Applied Physics Letters, vol. 93, p. 142107, 2008.
H. Levine, Seo, Y., and Nilsen-Hamilton, M., A discrete dynamical system arising in molecular biology, Discrete and Continuous Dynamical Systems, Series B (DCDS-B) , vol. 17, pp. 2091-2151, 2012.
E
X. Liu, Zhang, H., Nayak, S., Parada, G., Anderegg, J., Feng, S., Nilsen-Hamilton, M., Akinc, M., and Mallapragada, S. K., Effect of Surface Hydrophobicity on the Function of the Immobilized Biomineralization Protein Mms6, Industrial & Engineering Chemistry Research , vol. 54, pp. 10284-10292, 2015.
C. Vizzardelli, Pavelka, N., Luchini, A., Zanoni, I., Bendickson, L., Pelizzola, M., Beretta, O., Foti, M., Granucci, F., Nilsen-Hamilton, M., and Ricciardi-Castagnoli, P., Effects of dexamethazone on LPS-induced activationand migration of mouse dendritic cells revealed by a genome-wide transcriptional analysis, European Journal of Immunology, vol. 36, pp. 1504-15, 2006.
R. J. Playford, Belo, A., Poulsom, R., Fitzgerald, A. J., Harris, K., Pawluczyk, I., Ryon, J., Darby, T., Nilsen-Hamilton, M., Ghosh, S., and Marchbank, T., Effects of mouse and human lipocalin homologues 24p3/lcn2 and neutrophil gelatinase-associated lipocalin on gastrointestinal mucosal integrity and repair, Gastroenterology, vol. 131, pp. 809-17, 2006.
A. S. Determan, Trewyn, B. G., Lin, V. S., Nilsen-Hamilton, M., and Narasimhan, B., Encapsulation, stabilization, and release of BSA-FITC from polyanhydride microspheres, Journal of Controlled Release : official journal of the Controlled Release Society, vol. 100, pp. 97-109, 2004.
A. O. Elkhalil, Nilsen-Hamilton, M., Yoshizawa, F., and Sugita, S., Expression of SIP24 in the peripartum and postpartum rat uterus and its relation with postpartum neutrophils, Connective Tissue Research, vol. 46, pp. 235-41, 2005.
A. Trabandt, Aicher, W. K., Gay, R. E., Sukhatme, V. P., Nilsen-Hamilton, M., Hamilton, R. T., McGhee, J. R., Fassbender, H. G., and Gay, S., Expression of the collagenolytic and ras-induced cysteine protease cathepsin L and proliferation-associated oncogenes in synovial cells of MRL/1 mice and patients with rheumatoid arthritis, Matrix, vol. 10, pp. 349-361, 1990.
G
M. P. Allen and Nilsen-Hamilton, M., Granzymes D, E, F, and G are regulated through pregnancy and by IL-2 and IL-15 in granulated metrial gland cells, Journal of immunology, vol. 161, pp. 2772-9, 1998.
M. Nilsen-Hamilton, Growth factors signalling in early mammalian development, in CRC Reviews. Growth Factors in Mammalian Development (I.Y. Rosenblum and S. Heyner, eds) , Florida: CRC Press, 1989, pp. 135-166.

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