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V. R. Sunil, Patel, K. J., Nilsen-Hamilton, M., Heck, D. E., Laskin, J. D., and Laskin, D. L., Acute endotoxemia is associated with upregulation of lipocalin 24p3/Lcn2 in lung and liver, Experimental and Molecular Pathology, vol. 83, pp. 177-87, 2007.
M. Ilgu, Fulton, D. B., Yennamalli, R. M., Lamm, M. H., Sen, T. Z., and Nilsen-Hamilton, M., An adaptable pentaloop defines a robust neomycin-B RNA aptamer with conditional ligand-bound structures, RNA, vol. 20, pp. 815-24, 2014.
X. Cong and Nilsen-Hamilton, M., Allosteric aptamers: targeted reversibly attenuated probes, Biochemistry, vol. 44, pp. 7945-54, 2005.
D. H. Burke, Ozerova, N. D., and Nilsen-Hamilton, M., Allosteric hammerhead ribozyme TRAPs, Biochemistry, vol. 41, pp. 6588-94, 2002.
K. Kang, Sachan, A., Nilsen-Hamilton, M., and Shrotriya, P., Aptamer functionalized microcantilever sensors for cocaine detection, Langmuir : the ACS journal of surfaces and colloids, vol. 27, pp. 14696-702, 2011.
J. Banerjee and Nilsen-Hamilton, M., Aptamers: multifunctional molecules for biomedical research, Journal of molecular medicine, vol. 91, pp. 1333-42, 2013.
J. Oh, McCloskey, M. A., Blong, C. C., Bendickson, L., Nilsen-Hamilton, M., and Sakaguchi, D. S., An astrocyte-derived interleukin-6 promotes specific neuronal differentiation of neural progenitor cells from adult hippocampus, Journal of Neuroscience Research, vol. 88, pp. 2798-809, 2010.
C. L. Parfett, Hamilton, R. T., Howell, B. W., Edwards, D. R., Nilsen-Hamilton, M., and Denhardt, D. T., Characterization of a cDNA clone encoding murine mitogen-regulated protein: regulation of mRNA levels in mortal and immortal cell lines, Molecular and cellular biology, vol. 5, pp. 3289-92, 1985.
J. T. Nelson, Rosenzweig, N., and Nilsen-Hamilton, M., Characterization of the mitogen-regulated protein (proliferin) receptor, Endocrinology, vol. 136, pp. 283-8, 1995.
T. H. Chuang, Hamilton, R. T., and Nilsen-Hamilton, M., Cloning of the mink plasminogen activator inhibitor type-1 messenger RNA: an mRNA with a short half life, Gene, vol. 162, pp. 303-8, 1995.
D. T. Denhardt, Hamilton, R. T., Parfett, C. L., Edwards, D. R., St Pierre, R., Waterhouse, P., and Nilsen-Hamilton, M., Close relationship of the major excreted protein of transformed murine fibroblasts to thiol-dependent cathepsins, Cancer research, vol. 46, pp. 4590-3, 1986.
T. Prozorov, Palo, P., Wang, L., Nilsen-Hamilton, M., Jones, D., Orr, D., Mallapragada, S. K., Narasimhan, B., Canfield, P. C., and Prozorov, R., Cobalt ferrite nanocrystals: out-performing magnetotactic bacteria, ACSNano, vol. 1, pp. 228-33, 2007.
T. Wang, Hoy, J. A., Lamm, M. H., and Nilsen-Hamilton, M., Computational and experimental analyses converge to reveal a coherent yet malleable aptamer structure that controls chemical reactivity, Journal of the American Chemical Society, vol. 131, pp. 14747-55, 2009.
Y. J. Seo, Nilsen-Hamilton, M., and Levine, H. A., A computational study of alternate SELEX, Bulletin of mathematical biology, vol. 76, pp. 1455-521, 2014.
R. T. Hamilton and Nilsen-Hamilton, M., Conversion of monensin from an ionophore to an inhibitor of Na+ uptake by SV3t3 membrane vesicles as a function of Na+ concentration, Biochemical and biophysical research communications, vol. 95, pp. 140-7, 1980.
M. M. Hossen, Bendickson, L., Palo, P. E., Yao, Z., Nilsen-Hamilton, M., and Hillier, A. C., Creating metamaterial building blocks with directed photochemical metallization of silver onto DNA origami templates, NanotechnologyNanotechnology, vol. 29, p. 355603, 2018.
S. Saraswathi, Sundaram, S., Sundararajan, N., Zimmermann, M., and Nilsen-Hamilton, M., ICGA-PSO-ELM approach for accurate multiclass cancer classification resulting in reduced gene sets in which genes encoding secreted proteins are highly represented, IEEE/ACM transactions on computational biology and bioinformatics, vol. 8, pp. 452-63, 2011.
Q. Liu and Nilsen-Hamilton, M., Identification of a new acute phase protein, The Journal of biological chemistry, vol. 270, pp. 22565-70, 1995.
S. Nath, Spencer, V. A., Han, J., Chang, H., Zhang, K., Fontenay, G. V., Anderson, C., Hyman, J. M., Nilsen-Hamilton, M., Chang, Y. T., and Parvin, B., Identification of fluorescent compounds with non-specific binding property via high throughput live cell microscopy, PloS one, vol. 7, p. e28802, 2012.
M. Nilsen-Hamilton and Hamilton, R. T., Inhibition of alpha-aminoisobutyric acid transport in membrane vesicles from mouse fibroblasts after phosphorylation by cyclic AMP-dependent protein kinase, Biochimica et biophysica acta, vol. 588, pp. 322-31, 1979.
W. R. Allen, Nilsen-Hamilton, M., and Hamilton, R. T., Insulin and growth factors stimulate rapid posttranslational changes in glucose transport in ovarian granulosa cells, Journal of cellular physiology, vol. 108, pp. 15-24, 1981.
S. Feng, Wang, L., Palo, P., Liu, X., Mallapragada, S. K., and Nilsen-Hamilton, M., Integrated self-assembly of the Mms6 magnetosome protein to form an iron-responsive structure, International journal of molecular sciences, vol. 14, pp. 14594-606, 2013.
K. Mitchell, Szekeres, C., Milano, V., Svenson, K. B., Nilsen-Hamilton, M., Kreidberg, J. A., and DiPersio, C. M., Integrin alpha3beta1 in epidermis promotes wound angiogenesis and keratinocyte-to-endothelial-cell crosstalk through the induction of MRP3, Journal of Cell Science, vol. 122, pp. 1778-87, 2009.
W. Wang, Bu, W., Wang, L., Palo, P. E., Mallapragada, S., Nilsen-Hamilton, M., and Vaknin, D., Interfacial properties and iron binding to bacterial proteins that promote the growth of magnetite nanocrystals: X-ray reflectivity and surface spectroscopy studies, Langmuir : the ACS journal of surfaces and colloids, vol. 28, pp. 4274-82, 2012.
M. Nilsen-Hamilton, Buss, J., and Hamilton, R. T., Intracellular signaling from Ras to genes: an MCDB/ISU symposium held at Iowa State University, Ames, September 22-25, 1994.Introduction, Molecular reproduction and development, vol. 42, pp. 457-8, 1995.
M. Nilsen-Hamilton, Introduction: fibroblast growth factors and their receptors in development and disease, Molecular reproduction and development, vol. 39, pp. 41-2, 1994.
M. Ilgu, Wang, T., Lamm, M. H., and Nilsen-Hamilton, M., Investigating the malleability of RNA aptamers, Methods, vol. 63, pp. 178-87, 2013.
Y. J. Seo, Chen, S., Nilsen-Hamilton, M., and Levine, H. A., A mathematical analysis of multiple-target SELEX, Bulletin of Mathematical Biology, vol. 72, pp. 1623-65, 2010.
H. A. Levine and Nilsen-Hamilton, M., A mathematical analysis of SELEX, Computational Biology and Chemistry, vol. 31, pp. 11-35, 2007.
J. P. Peters, Boushaba, K., and Nilsen-Hamilton, M., A mathematical model for fibroblast growth factor competition based on enzyme kinetics, Mathematical Biosciences and Engineering, vol. 2, pp. 789-810, 2005.
C. L. Howk, Levine, H. A., Smiley, M. W., Mallapragada, S. K., Nilsen-Hamilton, M., Oh, J., and Sakaguchi, D. S., A mathematical model for selective differentiation of neural progenitor cells on micropatterned polymer substrates, Mathematical biosciences, vol. 238, pp. 65-79, 2012.
H. A. Levine, Smiley, M. W., Tucker, A. L., and Nilsen-Hamilton, M., A mathematical model for the onset of avascular tumor growth in response to the loss of p53 function, Cancer Informatics, vol. 2, pp. 163-88, 2006.
K. Boushaba, Levine, H. A., and Nilsen-Hamilton, M., A mathematical model for the regulation of tumor dormancy based on enzyme kinetics, Bulletin of Mathematical Biology, vol. 68, pp. 1495-526, 2006.
H. A. Levine, Tucker, A. L., and Nilsen-Hamilton, M., A mathematical model for the role of cell signal transduction in the initiation and inhibition of angiogenesis, Growth factors, vol. 20, pp. 155-75, 2002.
H. A. Levine, Sleeman, B. D., and Nilsen-Hamilton, M., A mathematical model for the roles of pericytes and macrophages in the initiation of angiogenesis. I. The role of protease inhibitors in preventing angiogenesis, Mathematical biosciences, vol. 168, pp. 77-115, 2000.
H. A. Levine, Pamuk, S., Sleeman, B. D., and Nilsen-Hamilton, M., Mathematical modeling of capillary formation and development in tumor angiogenesis: penetration into the stroma, Bulletin of mathematical biology, vol. 63, pp. 801-63, 2001.