Publications

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Journal Article
M. Ilgu, Fulton, D. B., Yennamalli, R. M., Lamm, M. H., Sen, T. Z., and Nilsen-Hamilton, M., An adaptable pentaloop defines a robust neomycin-B RNA aptamer with conditional ligand-bound structures, RNA, vol. 20, pp. 815-24, 2014.
S. L. Auwardt, Seo, Y. J., Ilgu, M., Ray, J., Feldges, R. R., Shubham, S., Bendickson, L., Levine, H. A., and Nilsen-Hamilton, M., Aptamer-enabled uptake of small molecule ligands, Sci Rep. , vol. 8, no. 1, p. 15712, 2018.
M. Ilgu and Nilsen-Hamilton, M., Aptamers in Analytics, The Analyst, vol. 141, pp. 1551-1568, 2016.
M. Ilgu, Yan, S., Khounlo, R., Lamm, M. H., and Nilsen-Hamilton, M., Common secondary and tertiary structural features of aptamer-ligand interaction shared by RNA aptamers with different primary sequences, Molecules, vol. 24, no. 24, p. 4535, 2019.
J. Ray, Ilgu, M., Shin, I. C., Bendickson, L., Gupta, V., Kraus, G. A., and Nilsen-Hamilton, M., IMAGEtags; Quantifying mRNA Transcription in Real Time with Multiaptamer Reporters, Methods in Enzymology , vol. 572, pp. 193-213, 2016.
M. Ilgu, Wang, T., Lamm, M. H., and Nilsen-Hamilton, M., Investigating the malleability of RNA aptamers, Methods, vol. 63, pp. 178-87, 2013.
M. Ilgu, Ray, J., Bendickson, L., Wang, T., Geraskin, I. M., Kraus, G. A., and Nilsen-Hamilton, M., Light-up and FRET Aptamer Reporters; Evaluating Their Applications for Imaging Transcription in Eukaryotic Cells, Methods, vol. 98, pp. 26-33, 2015.
I. Shin, Ray, J., Gupta, V., Ilgu, M., Beasley, J., Bendickson, L., Mehanovic, S., Kraus, G. A., and Nilsen-Hamilton, M., Live-cell imaging of Pol II promoter activity to monitor gene expression with RNA IMAGEtag reporters, Nucleic acids research, vol. 42, p. e90, 2014.
S. Yan, Peck, J., Ilgu, M., Nilsen-Hamilton, M., and Lamm, M. H., The Sampling Performance of Multiple Independent Molecular Dynamics Simulations of an RNA Aptamer, ACS Omega, vol. 5, no. 32, pp. 20187–20201, 2020.
A. Sachan, Ilgu, M., Kempema, A. M., Kraus, G. A., and M, N. - H., Specificity and ligand affinities of the cocaine aptamer; impact of structural features and physiological NaCl, Analytical Chemistry , vol. 88, pp. 7715-23, 2016.