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Journal Article
V. R. Sunil, Patel, K. J., Nilsen-Hamilton, M., Heck, D. E., Laskin, J. D., and Laskin, D. L., Acute endotoxemia is associated with upregulation of lipocalin 24p3/Lcn2 in lung and liver, Experimental and Molecular Pathology, vol. 83, pp. 177-87, 2007.
M. Ilgu, Fulton, D. B., Yennamalli, R. M., Lamm, M. H., Sen, T. Z., and Nilsen-Hamilton, M., An adaptable pentaloop defines a robust neomycin-B RNA aptamer with conditional ligand-bound structures, RNA, vol. 20, pp. 815-24, 2014.
X. Cong and Nilsen-Hamilton, M., Allosteric aptamers: targeted reversibly attenuated probes, Biochemistry, vol. 44, pp. 7945-54, 2005.
D. H. Burke, Ozerova, N. D., and Nilsen-Hamilton, M., Allosteric hammerhead ribozyme TRAPs, Biochemistry, vol. 41, pp. 6588-94, 2002.
K. Kang, Sachan, A., Nilsen-Hamilton, M., and Shrotriya, P., Aptamer functionalized microcantilever sensors for cocaine detection, Langmuir : the ACS journal of surfaces and colloids, vol. 27, pp. 14696-702, 2011.
J. Banerjee and Nilsen-Hamilton, M., Aptamers: multifunctional molecules for biomedical research, Journal of molecular medicine, vol. 91, pp. 1333-42, 2013.
J. Oh, McCloskey, M. A., Blong, C. C., Bendickson, L., Nilsen-Hamilton, M., and Sakaguchi, D. S., An astrocyte-derived interleukin-6 promotes specific neuronal differentiation of neural progenitor cells from adult hippocampus, Journal of Neuroscience Research, vol. 88, pp. 2798-809, 2010.
T. R. Davis, Tabatabai, L., Bruns, K., Hamilton, R. T., and Nilsen-Hamilton, M., Basic fibroblast growth factor induces 3T3 fibroblasts to synthesize and secrete a cyclophilin-like protein and beta 2-microglobulin, Biochimica et Biophysica Acta, vol. 1095, pp. 145-52, 1991.
C. L. Parfett, Hamilton, R. T., Howell, B. W., Edwards, D. R., Nilsen-Hamilton, M., and Denhardt, D. T., Characterization of a cDNA clone encoding murine mitogen-regulated protein: regulation of mRNA levels in mortal and immortal cell lines, Molecular and cellular biology, vol. 5, pp. 3289-92, 1985.
J. T. Nelson, Rosenzweig, N., and Nilsen-Hamilton, M., Characterization of the mitogen-regulated protein (proliferin) receptor, Endocrinology, vol. 136, pp. 283-8, 1995.
T. H. Chuang, Hamilton, R. T., and Nilsen-Hamilton, M., Cloning of the mink plasminogen activator inhibitor type-1 messenger RNA: an mRNA with a short half life, Gene, vol. 162, pp. 303-8, 1995.
D. T. Denhardt, Hamilton, R. T., Parfett, C. L., Edwards, D. R., St Pierre, R., Waterhouse, P., and Nilsen-Hamilton, M., Close relationship of the major excreted protein of transformed murine fibroblasts to thiol-dependent cathepsins, Cancer research, vol. 46, pp. 4590-3, 1986.
T. Prozorov, Palo, P., Wang, L., Nilsen-Hamilton, M., Jones, D., Orr, D., Mallapragada, S. K., Narasimhan, B., Canfield, P. C., and Prozorov, R., Cobalt ferrite nanocrystals: out-performing magnetotactic bacteria, ACSNano, vol. 1, pp. 228-33, 2007.
T. Wang, Hoy, J. A., Lamm, M. H., and Nilsen-Hamilton, M., Computational and experimental analyses converge to reveal a coherent yet malleable aptamer structure that controls chemical reactivity, Journal of the American Chemical Society, vol. 131, pp. 14747-55, 2009.
Y. J. Seo, Nilsen-Hamilton, M., and Levine, H. A., A computational study of alternate SELEX, Bulletin of mathematical biology, vol. 76, pp. 1455-521, 2014.
R. T. Hamilton and Nilsen-Hamilton, M., Conversion of monensin from an ionophore to an inhibitor of Na+ uptake by SV3t3 membrane vesicles as a function of Na+ concentration, Biochemical and biophysical research communications, vol. 95, pp. 140-7, 1980.
M. M. Hossen, Bendickson, L., Palo, P. E., Yao, Z., Nilsen-Hamilton, M., and Hillier, A. C., Creating metamaterial building blocks with directed photochemical metallization of silver onto DNA origami templates, NanotechnologyNanotechnology, vol. 29, p. 355603, 2018.
M. Nilsen-Hamilton and Hamilton, R. T., Detection of proteins induced by growth regulators, Methods in enzymology, vol. 147, pp. 427-44, 1987.
M. Nilsen-Hamilton, Matrisian, L. M., and Hamilton, R. T., Developing in a family way. Transforming Growth Factor Type beta and Related Proteins in Development: the Sixth Molecular, Cellular and Developmental Biology/Iowa State University Symposium, Ames, IA, USA September 20-23, 1991, The New biologist, vol. 4, pp. 127-31, 1992.
R. T. Hamilton, Bruns, K. A., Delgado, M. A., Shim, J. K., Fang, Y., Denhardt, D. T., and Nilsen-Hamilton, M., Developmental expression of cathepsin L and c-rasHa in the mouse placenta, Molecular reproduction and development, vol. 30, pp. 285-92, 1991.
C. Vizzardelli, Pavelka, N., Luchini, A., Zanoni, I., Bendickson, L., Pelizzola, M., Beretta, O., Foti, M., Granucci, F., Nilsen-Hamilton, M., and Ricciardi-Castagnoli, P., Effects of dexamethazone on LPS-induced activationand migration of mouse dendritic cells revealed by a genome-wide transcriptional analysis, European Journal of Immunology, vol. 36, pp. 1504-15, 2006.
R. J. Playford, Belo, A., Poulsom, R., Fitzgerald, A. J., Harris, K., Pawluczyk, I., Ryon, J., Darby, T., Nilsen-Hamilton, M., Ghosh, S., and Marchbank, T., Effects of mouse and human lipocalin homologues 24p3/lcn2 and neutrophil gelatinase-associated lipocalin on gastrointestinal mucosal integrity and repair, Gastroenterology, vol. 131, pp. 809-17, 2006.
A. S. Determan, Trewyn, B. G., Lin, V. S., Nilsen-Hamilton, M., and Narasimhan, B., Encapsulation, stabilization, and release of BSA-FITC from polyanhydride microspheres, Journal of Controlled Release : official journal of the Controlled Release Society, vol. 100, pp. 97-109, 2004.
A. O. Elkhalil, Nilsen-Hamilton, M., Yoshizawa, F., and Sugita, S., Expression of SIP24 in the peripartum and postpartum rat uterus and its relation with postpartum neutrophils, Connective Tissue Research, vol. 46, pp. 235-41, 2005.
M. Nilsen-Hamilton and Hamilton, R. T., Fibroblast growth factor causes an early increase in phosphorylation of a membrane protein in quiescent 3T3 cells, Nature, vol. 279, pp. 444-6, 1979.
G. A. Kraus, Jeon, I., Nilsen-Hamilton, M., Awad, A. M., Banerjee, J., and Parvin, B., Fluorinated analogs of malachite green: synthesis and toxicity, Molecules, vol. 13, pp. 986-94, 2008.
M. P. Allen and Nilsen-Hamilton, M., Granzymes D, E, F, and G are regulated through pregnancy and by IL-2 and IL-15 in granulated metrial gland cells, Journal of immunology, vol. 161, pp. 2772-9, 1998.
J. Ryon, Bendickson, L., and Nilsen-Hamilton, M., High expression in involuting reproductive tissues of uterocalin/24p3, a lipocalin and acute phase protein, The Biochemical journal, vol. 367, pp. 271-7, 2002.
S. Saraswathi, Sundaram, S., Sundararajan, N., Zimmermann, M., and Nilsen-Hamilton, M., ICGA-PSO-ELM approach for accurate multiclass cancer classification resulting in reduced gene sets in which genes encoding secreted proteins are highly represented, IEEE/ACM transactions on computational biology and bioinformatics, vol. 8, pp. 452-63, 2011.
Q. Liu and Nilsen-Hamilton, M., Identification of a new acute phase protein, The Journal of biological chemistry, vol. 270, pp. 22565-70, 1995.
S. Nath, Spencer, V. A., Han, J., Chang, H., Zhang, K., Fontenay, G. V., Anderson, C., Hyman, J. M., Nilsen-Hamilton, M., Chang, Y. T., and Parvin, B., Identification of fluorescent compounds with non-specific binding property via high throughput live cell microscopy, PloS one, vol. 7, p. e28802, 2012.
M. Nilsen-Hamilton and Hamilton, R. T., Inhibition of alpha-aminoisobutyric acid transport in membrane vesicles from mouse fibroblasts after phosphorylation by cyclic AMP-dependent protein kinase, Biochimica et biophysica acta, vol. 588, pp. 322-31, 1979.
W. R. Allen, Nilsen-Hamilton, M., and Hamilton, R. T., Insulin and growth factors stimulate rapid posttranslational changes in glucose transport in ovarian granulosa cells, Journal of cellular physiology, vol. 108, pp. 15-24, 1981.
S. Feng, Wang, L., Palo, P., Liu, X., Mallapragada, S. K., and Nilsen-Hamilton, M., Integrated self-assembly of the Mms6 magnetosome protein to form an iron-responsive structure, International journal of molecular sciences, vol. 14, pp. 14594-606, 2013.
K. Mitchell, Szekeres, C., Milano, V., Svenson, K. B., Nilsen-Hamilton, M., Kreidberg, J. A., and DiPersio, C. M., Integrin alpha3beta1 in epidermis promotes wound angiogenesis and keratinocyte-to-endothelial-cell crosstalk through the induction of MRP3, Journal of Cell Science, vol. 122, pp. 1778-87, 2009.
W. Wang, Bu, W., Wang, L., Palo, P. E., Mallapragada, S., Nilsen-Hamilton, M., and Vaknin, D., Interfacial properties and iron binding to bacterial proteins that promote the growth of magnetite nanocrystals: X-ray reflectivity and surface spectroscopy studies, Langmuir : the ACS journal of surfaces and colloids, vol. 28, pp. 4274-82, 2012.
M. Nilsen-Hamilton, Buss, J., and Hamilton, R. T., Intracellular signaling from Ras to genes: an MCDB/ISU symposium held at Iowa State University, Ames, September 22-25, 1994.Introduction, Molecular reproduction and development, vol. 42, pp. 457-8, 1995.
M. Nilsen-Hamilton, Introduction: fibroblast growth factors and their receptors in development and disease, Molecular reproduction and development, vol. 39, pp. 41-2, 1994.
M. Ilgu, Wang, T., Lamm, M. H., and Nilsen-Hamilton, M., Investigating the malleability of RNA aptamers, Methods, vol. 63, pp. 178-87, 2013.
L. K. Petersen, Determan, A. S., Westgate, C., Bendickson, L., Nilsen-Hamilton, M., and Narasimhan, B., Lipocalin-2-loaded Amphiphilic Polyanhydride Microparticles Accelerate Cell Migration, Journal of biomaterials science: Polymer edition, 2011.
I. Shin, Ray, J., Gupta, V., Ilgu, M., Beasley, J., Bendickson, L., Mehanovic, S., Kraus, G. A., and Nilsen-Hamilton, M., Live-cell imaging of Pol II promoter activity to monitor gene expression with RNA IMAGEtag reporters, Nucleic acids research, vol. 42, p. e90, 2014.
Y. J. Seo, Chen, S., Nilsen-Hamilton, M., and Levine, H. A., A mathematical analysis of multiple-target SELEX, Bulletin of Mathematical Biology, vol. 72, pp. 1623-65, 2010.
H. A. Levine and Nilsen-Hamilton, M., A mathematical analysis of SELEX, Computational Biology and Chemistry, vol. 31, pp. 11-35, 2007.
J. P. Peters, Boushaba, K., and Nilsen-Hamilton, M., A mathematical model for fibroblast growth factor competition based on enzyme kinetics, Mathematical Biosciences and Engineering, vol. 2, pp. 789-810, 2005.
C. L. Howk, Levine, H. A., Smiley, M. W., Mallapragada, S. K., Nilsen-Hamilton, M., Oh, J., and Sakaguchi, D. S., A mathematical model for selective differentiation of neural progenitor cells on micropatterned polymer substrates, Mathematical biosciences, vol. 238, pp. 65-79, 2012.
H. A. Levine, Smiley, M. W., Tucker, A. L., and Nilsen-Hamilton, M., A mathematical model for the onset of avascular tumor growth in response to the loss of p53 function, Cancer Informatics, vol. 2, pp. 163-88, 2006.
K. Boushaba, Levine, H. A., and Nilsen-Hamilton, M., A mathematical model for the regulation of tumor dormancy based on enzyme kinetics, Bulletin of Mathematical Biology, vol. 68, pp. 1495-526, 2006.
H. A. Levine, Tucker, A. L., and Nilsen-Hamilton, M., A mathematical model for the role of cell signal transduction in the initiation and inhibition of angiogenesis, Growth factors, vol. 20, pp. 155-75, 2002.
H. A. Levine, Sleeman, B. D., and Nilsen-Hamilton, M., A mathematical model for the roles of pericytes and macrophages in the initiation of angiogenesis. I. The role of protease inhibitors in preventing angiogenesis, Mathematical biosciences, vol. 168, pp. 77-115, 2000.
H. A. Levine, Pamuk, S., Sleeman, B. D., and Nilsen-Hamilton, M., Mathematical modeling of capillary formation and development in tumor angiogenesis: penetration into the stroma, Bulletin of mathematical biology, vol. 63, pp. 801-63, 2001.

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